PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EMT27607
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
Family MYB_related
Protein Properties Length: 367aa    MW: 39715.8 Da    PI: 8.0795
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EMT27607genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding41.14.1e-13112197248
                      SSS-HHHHHHHHHHHHHTTTT........................................-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGgg........................................tWktIartmgkgRtlkqcksrwqkyl 48 
                      g ++ eE+e    +++ lG++                                        +W+ Ia++++ gRt++++k++w++yl
         EMT27607 112 GMFSREEEETVMSLHATLGNKvhgncpsvllsnhgncscstwqlqlnehgrgsgpwqlrdaRWSQIAQHLP-GRTDNEVKNYWNSYL 197
                      56899******************************************************************.*************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500905.86610105IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.601.1E-91433IPR009057Homeodomain-like
SMARTSM007170.006614107IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.1E-97499IPR009057Homeodomain-like
SuperFamilySSF466891.13E-1191109IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.2E-9100132IPR009057Homeodomain-like
PROSITE profilePS5129410.2106201IPR017930Myb domain
SMARTSM007176.6E-11110199IPR001005SANT/Myb domain
CDDcd001671.05E-7157197No hitNo description
PfamPF002496.8E-9158197IPR001005SANT/Myb domain
SuperFamilySSF466891.13E-11169198IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.7E-18173198IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 367 aa     Download sequence    Send to blast
MGCKSCQKPK AQHRKGLWSP EEDQKLRDFI VRYPQGAAPQ GAVVAGGGPE APRLHRPLRP  60
QLLEHRPRQG RAFGKGFQQN SVKCTLACGL ERNGKSCRLR WINYLRPGLK HGMFSREEEE  120
TVMSLHATLG NKVHGNCPSV LLSNHGNCSC STWQLQLNEH GRGSGPWQLR DARWSQIAQH  180
LPGRTDNEVK NYWNSYLKKR VEGARSPAKS AGSDAPRSPT PSDSARERST VNQPSIAGSS  240
GPLESSSMAD DSSNLTIPGV VATIRPHTPV LPKVMFADWL DMDMDMDYGT GLMAPSALDA  300
AFDGSPAQLG VGHQGAVQVD GMCGAVDSLH GLGNGGICWE FDAGQIHMQG GGEFCDLLSV  360
SEFLGIN
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3705130.0AK370513.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2111O05.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003580215.11e-115PREDICTED: transcription factor LAF1-like
TrEMBLM8CJV40.0M8CJV4_AEGTA; Transcription factor LAF1
STRINGMLOC_73614.11e-147(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP170737109
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52260.11e-35myb domain protein 19